BrEPS command line tool
The command line tool (cmd) can be used to search a local copy of the database. The tool needs either Python 2.7 or Python 3.5 to run. For a quick help, please see the online help.
cmd can also be used for tool development. A documentation of the functions provided can be downloaded here.
For best performance, Python2 with Googles re2 is recommended!
The latest version (1.0.1) of the command line tool can be downloaded here.
BrEPS database creation
The db database creation tool can be downloaded and used under GNU General Public License. db can be used as desktop version and with SGE cluster architecture. In SGE cluster mode the working database needs to be on node1. The latest versions of BLAST and Clustal Omega are needed.
The database can be downloaded for use with the command line tool. Currently the database can be downloaded in MySQL and SQLite format.
Download the lastest database version:
Older versions of the database: